calculate_vitals

Calculate Vitals

Calculate vital signs from the blood volume pulse (BVP) signal.

Parameters:

Name	Type	Description	Default
bvp	list	List of BVP signal values.	required
fps	int	Frames per second of the BVP signal.	required
trim	bool	Whether to trim the signal. Defaults to False.	False
outliers_removal	bool	Whether to remove outliers from the calculated NNI. Defaults to False.	False
replace_median	bool	Whether to replace outliers with the median value. Defaults to False.	False

Returns:

Name	Type	Description
list		A list containing the heart rate (HR), HRV estimates dictionary, and peaks indices.

Source code in redesign_pipeline/vital_calculations/calculate_vitals.py

def calculate_vitals(bvp,fps,trim=False,outliers_removal=False,replace_median=False):
    """
    Calculate vital signs from the blood volume pulse (BVP) signal.

    Args:
        bvp (list): List of BVP signal values.
        fps (int): Frames per second of the BVP signal.
        trim (bool, optional): Whether to trim the signal. Defaults to False.
        outliers_removal (bool, optional): Whether to remove outliers from the calculated NNI. Defaults to False.
        replace_median (bool, optional): Whether to replace outliers with the median value. Defaults to False.

    Returns:
        list: A list containing the heart rate (HR), HRV estimates dictionary, and peaks indices.

    """

    hr = BVP_to_BPM(bvp, fps=fps)
    peaks_indices = multiple_peaks_finding(bvp,trim)
    nni = nni_from_peaks_indices(peaks_indices)
    if outliers_removal:
        nni = reject_outliers_multimodel(nni,replace_median=replace_median)
    hrv_dict = get_hrv_estimates(nni, fps, freq=True)

    return [hr,hrv_dict,peaks_indices]